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Troubleshooting Common Setup Issues

Diagnose common Clojure setup failures by reducing problems to terminal commands, checking JDK consistency, classpath construction, dependency resolution, editor REPL connection, and resource loading.

Most Clojure setup problems are not “Clojure problems”. They are JVM and classpath problems: an unexpected JDK, a dependency resolution failure, or an editor that is connected to the wrong REPL process.

The common failure modes

  • Wrong Java version (terminal vs IDE mismatch).
  • Dependencies not downloading (proxy/cert/network issues).
  • REPL starts, but the editor cannot connect (wrong port / wrong project / wrong command).
  • Code loads, but resources are missing (classpath and resources/ issues).
Symptom First thing to check
REPL starts from terminal but editor cannot connect Editor command, port, working directory, and project type
ClassNotFoundException or missing namespace Active classpath and namespace-to-file path mapping
Dependency will not resolve Coordinates, repository access, proxy/cert settings, and cached failures
Tests run in IDE but not terminal JDK, classpath aliases/tasks, and current working directory
Resources missing at runtime Whether resources/ is on the same classpath used by the REPL/test command

Debugging strategy: reduce it to the smallest reproducible command from the terminal, then add complexity back one step at a time.

This section gives you a checklist so you can get back to learning instead of fighting your environment.

In this section

  • Diagnose Java Version Conflicts
    Diagnose Clojure setup failures caused by mismatched JDKs, `JAVA_HOME`, IDE runtimes, Maven or Gradle toolchains, and class files compiled for newer Java versions.
  • Fix Clojure Environment Variables
    Fix Clojure setup problems caused by shell startup files, `PATH`, `JAVA_HOME`, editor-launched REPLs, proxy variables, and project commands running in different environments.
  • Debug Clojure Dependency Problems
    Debug missing libraries, version conflicts, classpath surprises, cached dependency failures, and Maven/Clojars access problems in Clojure CLI and Leiningen projects.
Revised on Saturday, May 23, 2026